Diesel engines cannot have any valve overlap because there is no room for either valve to be open at top dead center. In performance cam design, this is called a large separation angle. Performance engines are between 106 and 110° lobe separation angle between intake and exhaust lobes.
Why does this matter? Using tuned intake with proper headers can induce greater cylinder filling with the headers creating partial vacuum in the combustion chamber.
The tiny top dead center volume also reduces any gains with headers. Design exhaust back pressure is less than 1 PSI @ 3600 RPM. Intake restriction is even less with a dirty filter. Brake mean effective pressure is 85 PSI, this is the theoretical pressure required on the engine displacement to net identical power, taking into account the work required to intake + compress the air etc in addition to the positive work from the actual power stroke. Recall this can be as high as 1800 PSI on this engine..
Cool air intake, port matching and mandrel bend head pipes are just as effective and cheaper than Stan's when they were available.
To get more power from a diesel, you need more pressure. The J code is right at the smoke limit which is also at exhaust gas temperature of 1230°F when 48 mm^3 of diesel is injected at each stroke. To get more pressure on the power stroke you need more air density. Either keep it cool or increase the pressure. Well designed turbocharger systems do both without need for intercooling as boost pressure of 10 PSI is about the limit. This allows 20 mm^3 more fuel each stroke for about 210 HP.