There is no direct replacement that is better.
Upgraded automatic would be a WTEC 2 MD3060. These are found behind 8.3s that come in the A2s. They are found in M1117 ASVs in the military in that combo.
You could put It behind an NHC250 if needed.
A manual with a 10 or 13spd like
@Crf450x is a cheaper route. Especially if your MT654 hasn't gone out. Sell it and it'll cover the cost of a 10spd .
Only other option is to make different cab and engine mounts and swap to an SAE 1 bellhousing and use an HT740, HT754 which non electrical transmission. Or you can do a CAT7155 16spd. Which I have already done.