Thanks for the response.
First off, is the tranny an MT643 by Allison? I was aware of the rebuild and what they did, but I didn't even think to change the filter and fluids from the engine oil they use in there (go figure). Thats a good idea, but first I need to identify the tranny. What do you mean when you are talking about the tranny being "timed" correctly. Please elaborate.
Second, do you think it is an air leak since the system recovers so quickly? What exactly does the governor do (obviously governs the flow of air), but how and to what parts etc? The brakes, winch control (yes I know it is a hydraulically driven winch), and all other pneumatically operated parts work just fine (minus the CTIS) without the fluctuation.
I will tackle the CTIS issue once I get everything else knocked out (still wondering about the starter issue, as from what I have heard from other members the solenoid sticks when cold?)
Also, one other tid-bit. When I fired up the truck this morning (again, it is about 40 degrees outside and it started right up), I noticed the air pressure gauge indicated 0 for a bit and then all of a sudden jumped up to 60 psi and then climbed normally to just shy of 120. On a ogod note, it seems the system will hold a charge on the air system after then engine is off for quite some time. After 3 hours yesterday it had only decayed to about 80 psi.