To bypass the resistor (or not) will depend on your Pertronix instructions, and the type of coil you have.
In my case, I installed the Pertronix distributor, coil, and plug wires to eliminate compatibility issues.
Looking at a few of their instruction sheets on their website(I do not know which model you ordered), you may have to keep the factory ignition module in the loop.
One sheet I read said it will operate on 8-12 volts, so the resistor can probably stay in place.
It has been a quite a few years since I wired up a Chrysler module in a non-electronic vehicle, but your attached TM page shows reduced voltage (through the auxiliary ballast) going to the module.
I would not bypass this side of the resistor if the module is kept.
If I remember correctly, the modules ran off of less than 12 volts, so the ignition system would function longer if the alternator failed, or some other problem caused a voltage drop.
Was the truck running good before the swap?
Did it have the original Chrysler electronic ignition system, or had it been converted to points ignition?
If electronic and running good, I would keep the original system, as it is quite dependable.
The only bad (from the factory) Chrysler electronic ignition system I ever encountered were the 'Lean Burn' systems.
The M880 did not have 'Lean Burn".
Converting "Lean Burn' to standard electronic, or even points resulted in a much more reliable system.