Update,
I was driving the truck on Friday and out of the blue, the truck suddenly doesn’t want to shift to 3rd. To get to third, I have to wind out 2nd before shifting. I can’t get it into 3rd on downshift. The truck does not slip out of 3rd. Also there is a loud squeak when allowing the truck torque to decelerate the truck while in 3rd. I checked the magnet drain plug and no metal. On Saturday, the 5th gear suddenly does not stay in gear.
On Sunday, I pulled the top cover of the transmission off, Removed the output seal and bearing and pulled the output shaft gear set. I found the retaining clip for 5th gear was broken and I recovered all the pieces. 5th gear was allowed to walk forward on the shaft towards the 4/5 synchronizer. The brass synchronizer ring that mates with the conical part of the 5th gear is completely worn out. I assume it is from 5th rubbing against the synchronizer all the time since the C-clip broke. Inside the 5th gear is a polished steel bushing (bearing) that has a dowel pin to prevent the bushing from spinning on the shaft. The dowel pin came out and allowed the bushing to spin on the shaft. There doesn’t appear to be any damage to the shaft or the bushing. The dowel pin has some damage.
When I replaced the 5th gear on the counter shaft on 11/23/14, I inspected the output gear set. Everything looked good then, and I was in a rush to put the transmission back together. I recall the 5th gear C-clip in place, but opted not to disassemble the output shaft assembly since all the gears spin freely, the teeth looked in perfect shape, the synchronizers were in good shape, and the bearings were in good shape. The only thing that I couldn’t see is the dowel pin to the 5th gear bushing and the keys to the splined collar that the 2/3 synchronizer rides on. I don’t expect that the dowel pin could have caused the popping noise and surge in the driveline.
Oddly enough, the 2/3 synchronizer has no damage whatsoever. I even inspected using a 5x eye loupe. My guess the inability to shift to 3rd had something to do with the 5th gear being able to travel forward on the shaft. I’m pretty sure the squeaking in 3rd on deceleration was due to the 5th gear riding on the synchronizer. It can’t possibly be the 3rd gear bearing since 3rd is locked with the shaft when in gear. This forces 1st, 2nd, and 5th to spin at different rates with respect to the shaft. Since 5th was already rubbing, this is most likely the source of the squeak.
I have the 4/5 synchronizer on order and won’t be able to further troubleshoot until I get this back together.