I did not drop mine, I clocked mine as high as it will go. I have a 5 inch lift. I changed the output yokes to fixed cv style.
If you do not drop the t-case then you most likely have to change the u-joint style. The reason for the drop is mostly to match the angles on each end of the driveshaft.
With cv style you do not have to do this.
With my t-case up all the way and a 5 inch lift, I had to grind the front cv joint a little to keep the joint from binding. This was only when the front tires were hanging in the air.
With a load on the springs it is not a problem.
Check your motor mounts. Changing the angle on old motor mounts can cause them to fail. This will give you more vibration.
Also make sure your exhaust is not laying against the frame or t-case anywhere. I have a hose clamp around the frame and exhaust on passenger side pulling my exhaust away from my t-case, just a temp fix until I change the exhaust.